Banner

GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions ( ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THYM cis rs2243480 1 rs316332 chr7:65604299 CCT6P1 chr7:65216092-65228661:+ 0.63 5.27 8.65E-7 Diabetic kidney disease
THYM cis rs2243480 1 rs316334 chr7:65602126 CCT6P1 chr7:65216092-65228661:+ 0.64 5.31 7.1E-7 Diabetic kidney disease
THYM cis rs3204270 1 rs3204270 chr17:79682051 ARL16 chr17:79648234-79650954:- -0.51 -5 2.6E-6 Dental caries
THYM cis rs3204270 1 rs3204270 chr17:79682051 SLC25A10 chr17:79670407-79688041:+ 0.53 5.17 1.28E-6 Dental caries
THYM cis rs8078723 1 rs3213762 chr17:38178627 GSDMA chr17:38119226-38134019:+ -0.89 -9.51 1.83E-15 Neutrophil count;White blood cell count;C-reactive protein and white blood cell count
THYM cis rs9876781 1 rs3214041 chr3:48454468 TREX1 chr3:48501186-48509043:+ -0.29 -4.44 2.44E-5 Longevity
THYM cis rs10461617 1 rs33322 chr5:56175226 C5orf35 chr5:56205103-56213010:+ 0.75 9.04 1.84E-14 Type 2 diabetes
THYM cis rs10461617 1 rs33325 chr5:56142547 C5orf35 chr5:56205103-56213010:+ 0.77 9.59 1.25E-15 Type 2 diabetes
THYM cis rs10461617 1 rs33326 chr5:56142601 C5orf35 chr5:56205103-56213010:+ 0.75 9.04 1.84E-14 Type 2 diabetes
THYM cis rs3772130 1 rs33988592 chr3:121415610 IQCB1 chr3:121488610-121553926:- 0.45 4.25 5.03E-5 Cognitive performance
THYM cis rs12780845 1 rs33993216 chr10:17204139 CUBN chr10:16865966-17171816:- 0.31 4.8 5.85E-6 Homocysteine levels
THYM cis rs3796352 1 rs33999310 chr3:52883332 ITIH4 chr3:52847007-52866554:- -0.52 -4.62 1.18E-5 Immune reponse to smallpox (secreted IL-2)
THYM cis rs7849270 1 rs34055941 chr9:131895076 CRAT chr9:131857075-131873070:- 0.42 4.98 2.82E-6 Blood metabolite ratios
THYM cis rs3772130 1 rs34086988 chr3:121352745 IQCB1 chr3:121488610-121553926:- 0.47 4.28 4.46E-5 Cognitive performance
THYM cis rs2275426 1 rs34102169 chr1:46424864 CCDC163P chr1:45960581-45965646:- -0.49 -6 3.55E-8 Body mass index