GWAS-related eQTLs across different cancer types
We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).
Cancer type
|
eQTL type
|
tagSNP
|
Gene position (hg19)
|
p-value
|
|||||||
---|---|---|---|---|---|---|---|---|---|---|---|
THYM | cis | rs2243480 | 1 | rs316332 | chr7:65604299 | CCT6P1 | chr7:65216092-65228661:+ | 0.63 | 5.27 | 8.65E-7 | Diabetic kidney disease |
THYM | cis | rs2243480 | 1 | rs316334 | chr7:65602126 | CCT6P1 | chr7:65216092-65228661:+ | 0.64 | 5.31 | 7.1E-7 | Diabetic kidney disease |
THYM | cis | rs3204270 | 1 | rs3204270 | chr17:79682051 | ARL16 | chr17:79648234-79650954:- | -0.51 | -5 | 2.6E-6 | Dental caries |
THYM | cis | rs3204270 | 1 | rs3204270 | chr17:79682051 | SLC25A10 | chr17:79670407-79688041:+ | 0.53 | 5.17 | 1.28E-6 | Dental caries |
THYM | cis | rs8078723 | 1 | rs3213762 | chr17:38178627 | GSDMA | chr17:38119226-38134019:+ | -0.89 | -9.51 | 1.83E-15 | Neutrophil count;White blood cell count;C-reactive protein and white blood cell count |
THYM | cis | rs9876781 | 1 | rs3214041 | chr3:48454468 | TREX1 | chr3:48501186-48509043:+ | -0.29 | -4.44 | 2.44E-5 | Longevity |
THYM | cis | rs10461617 | 1 | rs33322 | chr5:56175226 | C5orf35 | chr5:56205103-56213010:+ | 0.75 | 9.04 | 1.84E-14 | Type 2 diabetes |
THYM | cis | rs10461617 | 1 | rs33325 | chr5:56142547 | C5orf35 | chr5:56205103-56213010:+ | 0.77 | 9.59 | 1.25E-15 | Type 2 diabetes |
THYM | cis | rs10461617 | 1 | rs33326 | chr5:56142601 | C5orf35 | chr5:56205103-56213010:+ | 0.75 | 9.04 | 1.84E-14 | Type 2 diabetes |
THYM | cis | rs3772130 | 1 | rs33988592 | chr3:121415610 | IQCB1 | chr3:121488610-121553926:- | 0.45 | 4.25 | 5.03E-5 | Cognitive performance |
THYM | cis | rs12780845 | 1 | rs33993216 | chr10:17204139 | CUBN | chr10:16865966-17171816:- | 0.31 | 4.8 | 5.85E-6 | Homocysteine levels |
THYM | cis | rs3796352 | 1 | rs33999310 | chr3:52883332 | ITIH4 | chr3:52847007-52866554:- | -0.52 | -4.62 | 1.18E-5 | Immune reponse to smallpox (secreted IL-2) |
THYM | cis | rs7849270 | 1 | rs34055941 | chr9:131895076 | CRAT | chr9:131857075-131873070:- | 0.42 | 4.98 | 2.82E-6 | Blood metabolite ratios |
THYM | cis | rs3772130 | 1 | rs34086988 | chr3:121352745 | IQCB1 | chr3:121488610-121553926:- | 0.47 | 4.28 | 4.46E-5 | Cognitive performance |
THYM | cis | rs2275426 | 1 | rs34102169 | chr1:46424864 | CCDC163P | chr1:45960581-45965646:- | -0.49 | -6 | 3.55E-8 | Body mass index |